<?xml version="1.0" standalone="no"?>
<!DOCTYPE MAGE-ML SYSTEM "MAGE-ML.dtd">
<MAGE-ML identifier="Affymetrix">
	<AuditAndSecurity_package>
		<Contact_assnlist>
			<Person identifier="Affymetrix:Person:bmarzolf" name="bmarzolf"/>
		</Contact_assnlist>
	</AuditAndSecurity_package>
<Protocol_package>
	<Hardware_assnlist>
		<Hardware identifier="Affymetrix:Hardware:FluidicsStation">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix:Parameter:FluidicsStationNumber" name="Station Number">
					<DataType_assn>
						<OntologyEntry category="Affymetrix:Data Type" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix:Parameter:FluidicsStationPosition" name="Position">
					<DataType_assn>
						<OntologyEntry category="Affymetrix:Data Type" value="integer"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="Affymetrix:Hardware Type" value="Fluidics Station"/>
			</Type_assn>
		</Hardware>
		<Hardware identifier="Affymetrix:Hardware:Scanner">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix:Parameter:ScannerID" name="Scanner ID">
					<DataType_assn>
						<OntologyEntry category="Affymetrix:Data Type" value="string"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix:Parameter:ScannerType" name="Scanner Type">
					<DataType_assn>
						<OntologyEntry category="Affymetrix:Data Type" value="string"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="Affymetrix:Hardware Type" value="Scanner"/>
			</Type_assn>
		</Hardware>
	</Hardware_assnlist>
	<Software_assnlist>
		<Software identifier="Affymetrix:Software:MAS">
			<Type_assn>
				<OntologyEntry category="Affymetrix:Software Type" value="Acquisition and analysis software"/>
			</Type_assn>
		</Software>
	</Software_assnlist>
	<Protocol_assnlist>
		<Protocol identifier="Affymetrix:Protocol:Hybridization-EukGE-WS2v5_450" name="EukGE-WS2v5_450" title="Fluidics Station Protocol">
			<Type_assn>
				<OntologyEntry category="Affymetrix:Protocol Type" value="Hybridization"/>
			</Type_assn>
			<Hardwares_assnreflist>
				<Hardware_ref identifier="Affymetrix:Hardware:FluidicsStation"/>
			</Hardwares_assnreflist>
			<Softwares_assnreflist>
				<Software_ref identifier="Affymetrix:Software:MAS"/>
			</Softwares_assnreflist>
		</Protocol>
		<Protocol identifier="Affymetrix:Protocol:Scan" title="Scan">
			<ParameterTypes_assnlist>
				<Parameter identifier="Affymetrix:Parameter:ScanPixelSize" name="Pixel Size">
					<DataType_assn>
						<OntologyEntry category="Affymetrix:Data Type" value="integer"/>
					</DataType_assn>
				</Parameter>
				<Parameter identifier="Affymetrix:Parameter:NumberOfScans" name="Number of Scans">
					<DataType_assn>
						<OntologyEntry category="Affymetrix:Data Type" value="integer"/>
					</DataType_assn>
				</Parameter>
			</ParameterTypes_assnlist>
			<Type_assn>
				<OntologyEntry category="Affymetrix:Protocol Type" value="Scan"/>
			</Type_assn>
			<Hardwares_assnreflist>
				<Hardware_ref identifier="Affymetrix:Hardware:Scanner"/>
			</Hardwares_assnreflist>
			<Softwares_assnreflist>
				<Software_ref identifier="Affymetrix:Software:MAS"/>
			</Softwares_assnreflist>
		</Protocol>
	</Protocol_assnlist>
</Protocol_package>
<BioMaterial_package>
	<BioMaterial_assnlist>
		<BioSource identifier="Affymetrix:BioSource:LN" name="LN">
			<PropertySets_assnlist>
				<NameValueType name="Sample Template Name" value="AffyCore" type="string"/>
				<NameValueType name="Array User Name" value="aoudes" type="string"/>
			</PropertySets_assnlist>
			<Characteristics_assnlist>
				<OntologyEntry category="Affymetrix:Sample Project" value="Asa Samples"/>
			</Characteristics_assnlist>
			<MaterialType_assn>
				<OntologyEntry category="Affymetrix:Material Type" value="Human"/>
			</MaterialType_assn>
		</BioSource>
	</BioMaterial_assnlist>
</BioMaterial_package>
<ArrayDesign_package>
	<ArrayDesign_assnlist>
		<PhysicalArrayDesign identifier="Affymetrix:PhysicalArrayDesign:HG-U133_Plus_2" name="HG-U133_Plus_2"/>
	</ArrayDesign_assnlist>
</ArrayDesign_package>
<Array_package>
	<Array_assnlist>
		<Array identifier="Affymetrix:Array:20040421_02_LN_2">
			<ArrayDesign_assnref>
				<PhysicalArrayDesign_ref identifier="Affymetrix:PhysicalArrayDesign:HG-U133_Plus_2"/>
			</ArrayDesign_assnref>
			<Information_assnref>
				<ArrayManufacture_ref identifier=""/>
			</Information_assnref>
		</Array>
	</Array_assnlist>
</Array_package>
<BioAssay_package>
	<Channel_assnlist>
		<Channel identifier="Affymetrix:Channel:570">
			<PropertySets_assnlist>
				<NameValueType name="Wavelength" value="570"/>
			</PropertySets_assnlist>
		</Channel>
	</Channel_assnlist>
	<BioAssay_assnlist>
		<PhysicalBioAssay identifier="Affymetrix:PhysicalBioAssay:20040421_02_LN_2" name="20040421_02_LN_2">
			<PhysicalBioAssayData_assnlist>
				<Image identifier="Affymetrix:Image:20040421_02_LN_2" URI="20040421_02_LN_2.DAT">
					<Channels_assnreflist>
						<Channel_ref identifier="Affymetrix:Channel:570"/>
					</Channels_assnreflist>
					<Format_assn>
						<OntologyEntry category="Affymetrix:Image Format" value="DAT"/>
					</Format_assn>
				</Image>
			</PhysicalBioAssayData_assnlist>
			<BioAssayCreation_assn>
				<Hybridization identifier="Affymetrix:Hybridization:20040421_02_LN_2" name="EukGE-WS2v5_450">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2004-04-22T18:11:00Z">
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="1">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix:Parameter:FluidicsStationNumber"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="2">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix:Parameter:FluidicsStationPosition"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix:Hardware:FluidicsStation"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix:Software:MAS"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="Affymetrix:Person:bmarzolf"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix:Protocol:Hybridization-EukGE-WS2v5_450"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Array_assnref>
						<Array_ref identifier="Affymetrix:Array:20040421_02_LN_2"/>
					</Array_assnref>
				</Hybridization>
			</BioAssayCreation_assn>
			<BioAssayTreatments_assnlist>
				<ImageAcquisition identifier="Affymetrix:ImageAcquisition:20040421_02_LN_2">
					<ProtocolApplications_assnlist>
						<ProtocolApplication activityDate="2004-04-22T18:34:00Z">
							<ParameterValues_assnlist>
								<ParameterValue value="1.56">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix:Parameter:ScanPixelSize"/>
									</ParameterType_assnref>
								</ParameterValue>
								<ParameterValue value="1">
									<ParameterType_assnref>
										<Parameter_ref identifier="Affymetrix:Parameter:NumberOfScans"/>
									</ParameterType_assnref>
								</ParameterValue>
							</ParameterValues_assnlist>
							<HardwareApplications_assnlist>
								<HardwareApplication>
									<ParameterValues_assnlist>
										<ParameterValue value="50208770">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix:Parameter:ScannerID"/>
											</ParameterType_assnref>
										</ParameterValue>
										<ParameterValue value="M10">
											<ParameterType_assnref>
												<Parameter_ref identifier="Affymetrix:Parameter:ScannerType"/>
											</ParameterType_assnref>
										</ParameterValue>
									</ParameterValues_assnlist>
									<Hardware_assnref>
										<Hardware_ref identifier="Affymetrix:Hardware:Scanner"/>
									</Hardware_assnref>
								</HardwareApplication>
							</HardwareApplications_assnlist>
							<SoftwareApplications_assnlist>
								<SoftwareApplication>
									<Software_assnref>
										<Software_ref identifier="Affymetrix:Software:MAS"/>
									</Software_assnref>
								</SoftwareApplication>
							</SoftwareApplications_assnlist>
							<Performers_assnreflist>
								<Person_ref identifier="Affymetrix:Person:bmarzolf"/>
							</Performers_assnreflist>
							<Protocol_assnref>
								<Protocol_ref identifier="Affymetrix:Protocol:Scan"/>
							</Protocol_assnref>
						</ProtocolApplication>
					</ProtocolApplications_assnlist>
					<Target_assnref>
						<PhysicalBioAssay_ref identifier="Affymetrix:PhysicalBioAssay:20040421_02_LN_2"/>
					</Target_assnref>
					<Images_assnreflist>
						<Image_ref identifier="Affymetrix:Image:20040421_02_LN_2"/>
					</Images_assnreflist>
				</ImageAcquisition>
			</BioAssayTreatments_assnlist>
		</PhysicalBioAssay>
	</BioAssay_assnlist>
</BioAssay_package>
<Experiment_package>
	<Experiment_assnlist>
		<Experiment identifier="Affymetrix:Experiment:20040421_02_LN_2" name="20040421_02_LN_2">
			<BioAssays_assnreflist>
				<PhysicalBioAssay_ref identifier="Affymetrix:PhysicalBioAssay:20040421_02_LN_2"/>
			</BioAssays_assnreflist>
			<ExperimentDesign_assn>
				<ExperimentDesign/>
			</ExperimentDesign_assn>
		</Experiment>
	</Experiment_assnlist>
</Experiment_package>
</MAGE-ML>
