Report Type: Expression Report Date: 01:40PM 04/30/2004 ______________________________________________________________________ Filename: LN_1B.CHP Probe Array Type: HG-U133_Plus_2 Algorithm: Statistical Probe Pair Thr: 8 Controls: Antisense ______________________________________________________________________ Alpha1: 0.05 Alpha2: 0.065 Tau: 0.015 Noise (RawQ): 1.010 Scale Factor (SF): 2.898 TGT Value: 250 Norm Factor (NF): 1.000 ______________________________________________________________________ Background: Avg: 32.47 Std: 0.39 Min: 31.90 Max: 33.50 Noise: Avg: 1.47 Std: 0.04 Min: 1.40 Max: 1.60 Corner+ Avg: 118 Count: 32 Corner- Avg: 14388 Count: 32 Central- Avg: 15569 Count: 9 ______________________________________________________________________ The following data represents probe sets that exceed the probe pair threshold and are not called "No Call". Total Probe Sets: 54675 Number Present: 23123 42.3% Number Absent: 30826 56.4% Number Marginal: 726 1.3% Average Signal (P): 987.0 Average Signal (A): 18.8 Average Signal (M): 61.2 Average Signal (All): 428.9 ______________________________________________________________________ Housekeeping Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-HUMISGF3A/M97935 185.9 P 276.4 P 812.2 P 424.81 4.37 AFFX-HUMRGE/M10098 472.2 P 462.4 P 549.1 P 494.57 1.16 AFFX-HUMGAPDH/M33197 17242.0 P 16617.8 P 17798.8 P 17219.54 1.03 AFFX-HSAC07/X00351 5912.2 P 7729.8 P 11692.6 P 8444.90 1.98 AFFX-M27830 950.0 P 2645.1 P 46.3 A 1213.78 0.05 ______________________________________________________________________ Spike Controls: Probe Set Sig(5') Det(5') Sig(M') Det(M') Sig(3') Det(3') Sig(all) Sig(3'/5') AFFX-BIOB 807.9 P 1214.4 P 712.8 P 911.73 0.88 AFFX-BIOC 1798.8 P 1862.6 P 1830.70 1.04 AFFX-BIOD 2619.3 P 8124.9 P 5372.11 3.10 AFFX-CRE 19187.5 P 23287.9 P 21237.72 1.21 AFFX-DAP 1894.8 P 3036.7 P 3394.6 P 2775.36 1.79 AFFX-LYS 350.1 P 376.0 P 660.2 P 462.13 1.89 AFFX-PHE 464.5 P 569.5 P 408.1 P 480.73 0.88 AFFX-THR 422.1 P 619.7 P 783.2 P 608.31 1.86 AFFX-TRP 13.2 A 22.1 A 17.0 A 17.46 1.29 AFFX-R2-EC-BIOB 1080.6 P 1684.5 P 956.3 P 1240.45 0.88 AFFX-R2-EC-BIOC 1994.4 P 2850.0 P 2422.24 1.43 AFFX-R2-EC-BIOD 8696.4 P 9721.9 P 9209.15 1.12 AFFX-R2-P1-CRE 30606.7 P 31309.0 P 30957.82 1.02 AFFX-R2-BS-DAP 2796.3 P 3403.1 P 4173.6 P 3457.68 1.49 AFFX-R2-BS-LYS 536.2 P 439.3 P 391.8 P 455.79 0.73 AFFX-R2-BS-PHE 757.1 P 602.7 P 819.6 P 726.47 1.08 AFFX-R2-BS-THR 622.9 P 788.9 P 976.0 P 795.94 1.57 ______________________________________________________________________